Thursday, October 10, 2024
UW Medicine Live Stream Press Conference: Biochemist David Baker receive...
UW Medicine Live Stream Press Conference: Biochemist David Baker receives Nobel Prize 10:30 a.m. PT
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A press conference with Nobel Laureate David Baker is planned for 10:30 a.m. Pacific time today.
Computational biologist David Baker, professor of biochemistry at the University of Washington School of Medicine and director of the UW Medicine Institute for Protein Design, has been awarded the 2024 Nobel Prize in Chemistry for computational protein design.
He shares the Nobel Prize with Demis Hassabis and John M. Jumper of DeepMind, who were honored for protein structure prediction. The award was announced today by the Royal Swedish Academy of Sciences.
RESOURCES:
Our news release on the UW Medicine Newsroom has links to downloadable images and video, Baker’s bio and other collateral. Please credit “University of Washington School of Medicine” with any republication of photo or video content.
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0:04
[Applause]
0:23
I know
0:30
hello everybody I'm going to um just
0:33
tell you what our plan is for the agenda
0:37
today we're going to try and keep this
0:39
at 30 minutes and it's a momentous day
0:41
we're really excited that everybody is
0:42
here to enjoy with us this
0:45
uh big exciting day for everybody at
0:48
udub medicine and udub so we're g to
0:51
kick it off with a welcome from anamari
0:53
CI udub president followed by Tim delet
0:56
CEO of udub medicine and then we're
0:58
going to hear from David we would like
1:00
to have questions at the end of the um
1:04
press availability without interruptions
1:06
if we can and then can we make sure and
1:09
turn off all our phones so we don't have
1:12
any vibrations or anything and then we
1:15
will be going over to David's lab to get
1:18
some video and photos of him uh greeting
1:21
his faculty and staff there and you can
1:25
follow us it's about a block so it's
1:27
walkable and if you need to leave some
1:29
of your equipment here you can do that
1:31
we will have people here that can um
1:34
watch that for you thank you and we're
1:36
going to thank you anamar for welcoming
1:41
everybody let's be honest this is about
1:43
as good as a
1:44
guess I mean just no question about it
1:49
this is as good as it gets and you know
1:53
good morning this is truly an
1:55
extraordinary event although in the life
1:58
of David I think that you know prizes
1:59
like this kind of getting
2:02
ordinary and that is uh and that is such
2:05
an incredible tribute to him you know we
2:08
are so proud to be the home of some of
2:11
the most remarkable creative Innovative
2:14
and talented faculty and we don't have a
2:17
better example of that than David and
2:20
they are the reason why we are
2:22
recognized as one of the top public
2:25
universities of the world in terms of
2:27
impact because this is if you look at
2:30
David's work this is about taking these
2:34
great basic science ideas and pushing
2:37
them out so that they make a difference
2:39
in the world and that's what we are all
2:43
about and what we want to be for the
2:45
state and for the world I was teasing
2:48
earlier that he is a fabulous local
2:51
example and what I mean by that is he's
2:54
he's a local kid Garfield High I mean he
2:57
really is a local kid and he's having a
3:00
global impact no question about it today
3:03
and we are so proud to recognize our
3:05
eighth Nobel Prize winner um since
3:08
joining the University of Washington
3:10
faculty in
3:11
1993 um David Baker has helped Define
3:15
what Modern Biology is through a truly
3:18
Visionary approach to protein science um
3:21
just by looking at his current roles you
3:23
can see the scope of his work um I won't
3:26
make pretend to understand it all um but
3:29
I do understand the impact that it's
3:32
having he's a professor of biochemistry
3:34
in our school of medicine and he's an
3:36
Adjunct professor in genome sciences and
3:38
bioengineering and chemical engineering
3:41
in computer science and physics and that
3:44
is because the scope of his work is so
3:48
Broad and that's what we're trying to do
3:50
here is make the barriers to this kind
3:53
of interdisciplinary approach um as low
3:58
as possible um he's also the director of
4:01
course of the Institute of protein
4:02
design at w medicine and a Howard Hughes
4:05
Medical Institute investigator he's also
4:08
an elected member of the National
4:09
Academy of
4:11
Sciences he's had a bunch of awards we
4:13
could be here all day if we talked about
4:15
all of them so I'll just mention a few
4:18
the 2021 breakthrough prize in life
4:21
sciences earlier just earlier this year
4:24
times named him one of the world's 100
4:26
most influential people in health alist
4:29
he would have made if it was the top 10
4:32
most influential people in health he won
4:35
the for Frontier Prides of knowledge
4:37
award in biology and bio and
4:39
biochemistry and biomedicine by the BBVA
4:42
foundation in Spain and earlier this
4:45
month he was named a clarivate citation
4:49
laurate in recognition of the importance
4:51
of his research papers through scientist
4:54
around the world I want to just stress
4:56
that that what we're talking about is
4:58
that other scientists are citing his
5:00
work as being critical to their work and
5:04
that is what it's all about we couldn't
5:07
be prouder of this lifelong Seattle it
5:11
um his parents were faculty members here
5:14
at the U and this graduate of Garfield
5:17
High um which is just about as good as
5:21
it gets Dr Baker on behalf of the
5:24
University of Washington
5:26
congratulations and
5:33
but not just congratulations thank you
5:36
for making our University and our world
5:39
a better place and you're just beginning
5:42
I mean that's what I want to stress
5:44
Nobel prizes often come at the end of
5:46
someone's career David has his career
5:50
ahead of this is just the beginning and
5:53
so now I'd like to introduce Dr Tim
5:56
dallet CEO of w medicine and one of of
5:59
the strongest supporters of David across
6:03
our campus he's also the Paul G Ramsey
6:05
and DOW dean of the school of medicine
6:07
Tim you understand his work better than
6:09
I do so take it
6:11
[Applause]
6:14
away thank you thank you president K and
6:18
I'm just so happy uh for David for his
6:21
family it's great to see Hana here uh
6:24
who also is a star uh in her own right
6:27
uh for our entire University Washington
6:30
Community and especially the community
6:32
of protein design The Institute of
6:34
protein design and all the individuals
6:36
who have been involved and worked with
6:38
David uh throughout his uh career you
6:41
know in my roles I really have the
6:42
privilege of helping to support uh and
6:45
often facilitate the way uh for our
6:48
faculty our staff our trainees our
6:50
students and our faculty really conduct
6:53
World leading biomedical research that
6:56
expands our scientific understanding and
6:58
leads to new
7:00
in science and medicine and this is just
7:03
a phenomenal day it's a wonderful
7:05
recognition of really the LIF long work
7:08
of David and it's great to have this
7:10
come while David's still in his prime uh
7:12
and can't wait to see what he continues
7:15
uh to discover you know David and his
7:17
team really contributed and led the
7:20
cracking of the code to protein
7:23
structure how amino acid chains fold
7:26
together in a three-dimensional
7:27
structure to be the life BL building
7:30
blocks uh of Life by harnessing
7:33
artificial intelligence and
7:36
computational uh protein design you know
7:39
the institute for protein design now
7:40
they create novel proteins that have
7:42
never been seen before in nature to
7:45
really help us address some of the most
7:48
challenging uh issues we face whether it
7:50
be in medicine technology or even
7:53
sustainability among some of the most
7:56
promising applications for medicine
7:58
protein design is Paving the way for
8:00
development of new and highly effective
8:03
vaccines novel therapies such as
8:05
antivirals to block viral infection
8:08
treatment of celiac disease cancer
8:12
immunogenics it is just phenomenal what
8:15
David's scientific innovation and
8:18
Discovery is leading to in terms of
8:20
impact for health of our communities
8:23
protein design also has the potential to
8:25
provide again innovative solutions to
8:28
some of our biggest Environ irental
8:29
challenges by creating new biodegradable
8:32
materials sequestering carbon and
8:35
breaking down
8:36
pollutants as director of The Institute
8:38
for protein design and as president Kai
8:42
mentioned David's impact goes far beyond
8:44
his research here at the University of
8:47
Washington it truly extends to the
8:49
global scientific community Through over
8:52
600 published papers and his real
8:56
commitment to open science that is a
8:59
available freely to everyone it includes
9:02
moving research to practical
9:05
applications more quickly through 21
9:07
companies that he has co-founded and
9:09
more than a hundred patents so again
9:12
taking that scientific innovation that
9:14
Discovery and translating it to real
9:17
world impact impact it also includes his
9:20
role as a mentor to more than 90
9:22
students and postdocs who are now making
9:25
their own contributions to the field of
9:27
protein design in faculty position
9:29
around the world so thank you David
9:33
thank you for your amazing contributions
9:35
not only to our community here at the
9:37
University of Washington but really
9:39
globally and so now it's my distinct
9:41
honor to introduce our newest Nobel
9:44
Laurette at the University of Washington
9:46
please join me in welcoming Dr David
9:53
[Applause]
9:59
well I I um what can I say I want to
10:02
start by thanking um almost everybody
10:05
here and uh so I want to thank Anna
10:08
Marie and and and Tim for really uh
10:11
making the University of Washington an
10:13
absolutely uh wonderful uh place to do
10:17
science as Anna Mari it's said it's an
10:20
incredibly collaborative place and I've
10:23
never really I've never felt uh during
10:25
the whole time I were was here that
10:26
there were really any boundaries within
10:28
the University
10:29
um and uh so I'd like to thank both of
10:32
them for making the university the
10:34
university leadership has just been
10:36
amazing of a big b
10:38
t-shirt um and you know I've been here
10:41
for for quite a long time and I never
10:43
thought for an ANC about leaving so it's
10:45
really been um great privilege to be
10:48
here and so and um so keep up the great
10:51
work and uh um uh Trisha is here and uh
10:55
she really played a huge role in in um
10:59
everything we've been able to do and the
11:00
founding of the institute for protein
11:02
design and uh my wife hola is here and
11:06
she basically made everything possible
11:08
by among other things uh putting up with
11:10
me over the
11:12
years and uh uh and Linda are our our
11:16
director of uh The Institute for protein
11:18
design is you know is is um really kind
11:21
of the adult in the room and making sure
11:24
that everything everything happens and
11:27
while I just sort of play around um
11:30
and uh let's see in the back um I think
11:32
I see there my colleagues Frank and Neil
11:36
um who've um uh been it's been great to
11:39
to um start the institute for protein
11:42
design and have and have the most some
11:44
of the most amazing scientists I've ever
11:46
worked with um stay continueous
11:50
professors doing really absolutely
11:51
amazing things and it's been an absolute
11:53
privilege to um uh to uh to work with
11:57
them over the years and um as uh as Tim
12:00
and anamar says I'm very very excited
12:02
about the future I think uh protein
12:04
design has huge potential to uh make the
12:07
world a better place and I really do
12:09
think we're just at the very very
12:15
[Applause]
12:21
beginning Yeah question I'd be very
12:23
happy to take any questions so okay
12:25
we're going to start here I may ask a
12:27
long question I
12:31
iow I you toow sink
12:37
us can you briefly explain what prot
12:42
design is why you got into it
12:47
and can you talk about your work that
12:52
specifically your work the Nob PR yes so
12:56
proteins are the miniature machines that
12:58
carry out all the important jobs in our
13:00
bodies and in all living things so
13:02
basically all the remarkable properties
13:04
you see of any animal plant or anything
13:08
those are being mediated by proteins um
13:11
up until I guess before our work the
13:14
only proteins that we knew about were
13:17
the proteins that um we discovered in in
13:21
nature so a lot of molecular biology and
13:23
a lot of biology over the last probably
13:25
hundred years has been about trying to
13:28
find if you you're trying to study some
13:31
biological process like how muscles work
13:34
or or really anything it's been about
13:36
identifying what the proteins are and so
13:40
um sometimes you might you know read in
13:42
the newspaper elsewhere about some new
13:45
exotic protein that someone has
13:47
discovered that has an exotic name and
13:49
those were really all the proteins that
13:50
we knew about were the ones that sort of
13:52
came through Evolution and I kind of
13:55
liken it to sort of the Elven runes that
13:57
you discover from prehistory because
13:59
there are kind of all of these exotic
14:00
names and the idea that you could make
14:02
new ones was kind of a crazy idea so
14:07
because proteins uh solve all the
14:09
problems in that that life living things
14:13
have to deal with so well um if you
14:15
could make new proteins um you could
14:18
potentially solve a lot of current
14:20
problems for which there aren't proteins
14:22
to deal with like for example um you
14:25
know there Pro new problems that arise
14:27
because we live longer today so
14:29
you know diseases like Alzheimer's are
14:31
important you know cancer is more
14:33
important we're heating up and polluting
14:35
the planet so we have new ecological
14:38
problems so if we had a long time to
14:40
wait uh then maybe new proteins would
14:42
evolve to help deal with these problems
14:44
but evolution happens on you know
14:46
geological time scales so with protein
14:49
design now um what we've learned how to
14:52
do is to design completely new proteins
14:55
that have new functions and so now we're
14:57
working on problems like like designing
15:00
proteins to um uh to attack Cancers and
15:04
acting much more specifically and
15:06
precisely in the body so be safer and
15:09
more effective than current treatments
15:11
similarly for autoimmunity being able to
15:13
dampen down the immune system where it's
15:15
gone ay my colleague Neil who's in the
15:18
back has developed the first um denovo
15:20
design medicine that is in use in humans
15:23
a Corona virus vaccine and his group is
15:27
designing making great progress to a
15:29
universal flu vaccine for example um
15:32
outside of medicine um I should say
15:35
another area that is important in
15:36
medicine that we're working on in
15:38
addition to vaccines are um proteins
15:41
that will um neutralize pandemic viruses
15:45
and so we're sort of going through the
15:47
list of the greatest viruses of concern
15:49
and designing proteins to block them and
15:53
some of these are headed for human
15:54
clinical trials um outside of biology I
15:58
mentioned that were uh we're you know
16:00
we're polluting the planet we're putting
16:02
a lot of plastic out there and a lot of
16:03
other toxic things we're designing
16:05
proteins that carry out chemical
16:07
reactions to um for example to uh to uh
16:11
break down plastic molecules and other
16:14
um uh other pollutants that were putting
16:17
into the environment uh were designing
16:20
proteins that interact with uh with
16:22
solar radiation to try to increase the
16:25
efficiency of
16:27
photosynthesis and we're designing
16:28
proteins that uh to mediate uh enhan
16:31
carbon fixation and uh we're just
16:33
starting to collaborate with others at
16:35
the U to work on the the methane
16:38
sequestration problem um and uh there
16:41
are also huge opportunities for proteins
16:43
and making new types of materials uh
16:46
we're familiar with things like bone and
16:47
tooth and shell which are made by from
16:49
proteins interacting with minerals and
16:52
now with protein design we can make
16:53
proteins that mediate mineralization and
16:55
create new interesting materials from
16:57
from not just things like calcium
16:59
carbonate and calcium phosphate but
17:01
things like semiconductors um so there's
17:03
a lot of different applications now I'm
17:05
not sure if I answered everything you
17:07
asked but you got a mouthful anyway
17:14
yeah your Nobel
17:18
Prize it's
17:21
computational protein I have idea what I
17:25
just said
17:29
What specifically what was your specific
17:32
project or right well it was for sort of
17:36
research that led to the Nobel
17:39
Prize can you give me
17:44
aart
17:47
level Lon
17:51
on okay well yeah the prize was for
17:54
computational protein design and that
17:57
means design or creating brand new
18:00
proteins that don't exist in nature um
18:04
and uh I um uh and so like I said
18:09
proteins are kind of the the workhorses
18:12
of all living things there were proteins
18:14
many proteins known before uh that
18:18
mediate the processes of life what this
18:20
Nobel prize is for is for U discovering
18:24
how to create completely new proteins
18:30
yeah can you talk a little bit about
18:32
what it was that first you to this
18:36
[Music]
18:39
work can you talk a little bit their
18:41
influence on You Scientist as well what
18:45
specifically yeah so um the problem I
18:49
think what really interested me about
18:51
the problem in the first place is that
18:54
um so living things are very different
18:57
from uh inanimate things like the just
19:01
you know the rest the rest of chemistry
19:03
you know you have you have chemicals
19:05
which are not alive and then you have
19:07
biology things which are alive and um
19:11
protein proteins are kind of at the
19:13
intersection between the two because a
19:15
protein is just a very large molecule
19:18
and so it's very much sort of a chemical
19:20
sort of thing it's just a molecule
19:22
without a made out of atoms connected by
19:24
bonds um but proteins have this amazing
19:28
proc amazing aming ability to
19:29
self-organize they be they they fold up
19:31
into shapes that kind of have these
19:34
magical functions and so it's really
19:35
kind of the simplest case of biological
19:40
self-organization and uh I think it took
19:43
my my path to um getting to um to being
19:46
interested in proteins actually it was a
19:48
kind of a long and Circ circuitous path
19:51
I didn't really start working on on um
19:54
on on proteins until well on the problem
19:57
until I became a professor are here
19:59
really which um uh uh um so it was I I
20:04
it wasn't something that I even was
20:06
aware of when um when I was growing up
20:09
so um I have to thank my parents who are
20:12
um who are uh who are actually going to
20:15
be at the celebration later uh for um
20:18
you know for for teaching me how how to
20:21
think and do many things but the the
20:23
protein part came really kind of late
20:25
and it wasn't like I was fascinated as a
20:26
kid about by proteins well then what was
20:29
it at what point did did you start
20:33
realizing wow this would be a
20:34
fascinating I think well in um uh um I
20:38
actually in college well I went to
20:40
Garfield High School and um and then uh
20:43
when I went to college I um actually
20:46
thought I wanted to be a social studies
20:47
and then a philosophy major so it was
20:49
only kind of late that I switched to
20:51
biology and my last year of of um of
20:54
undergraduate um my fourth year as a
20:57
senior year I took a biology class and
20:59
learned about proteins and how they fold
21:00
up and I thought that would be a really
21:02
interesting thing was really interesting
21:04
but I remember um you had to write a
21:07
paper in the class on saying I wanted to
21:08
write a paper on that and the TA said oh
21:10
that's way too complicated no one will
21:11
ever understand it so I I didn't do that
21:14
and then um and then but I got excited
21:17
about biology and then another
21:21
University and then um I got excited
21:24
about biology though and I went to
21:26
graduate school and worked on something
21:27
completely different different and um
21:30
and then like I said it was really when
21:31
I came here that I started working on on
21:34
the the protein folding problem and then
21:36
that got us into how to design
21:40
proteins and again I have to thank the
21:42
University of Washington the department
21:43
of biochemistry uh for uh kind of uh you
21:47
know taking me in the first place even
21:48
though I didn't really know what I was
21:50
doing and then I had the freedom really
21:52
here to pursue um pursue the science as
21:55
it developed and I really it wasn't like
21:58
I had a
21:59
plan I've never said I've always said I
22:01
can never see more than three months
22:03
ahead so yeah I understand from talking
22:06
to your colleagues that you had some
22:07
Skeptics um early on that this could be
22:10
done yeah can you tell us what why they
22:15
thought that couldn't be done and how
22:18
youed yeah well to begin with the only
22:22
proteines like I said that were known
22:24
were the ones that came through um The
22:27
evolutionary process so saying could
22:28
make a new protein someone could sort of
22:31
interpret like oh I can make a new
22:32
animal or I can make a new plant and
22:34
those would be obviously really really
22:35
hard to do so you're kind of make
22:37
something that's kind of like a living
22:38
thing but you're making it from scratch
22:41
I mean is that really possible and then
22:42
after we showed we could make proteins
22:44
that folded up but were totally inert
22:47
the idea that you could give them
22:48
functions and make them do things uh was
22:52
kind of a crazy idea and we were
22:53
actually kind of on The Lunatic Fringe
22:55
for many many years and saying that we
22:57
were going to in trying to make proteins
23:00
that could carry out um uh very
23:02
sophisticated functions just starting
23:04
completely from scratch so many PE many
23:08
engineers in biology have taken proteins
23:10
that already exist in in nature and
23:12
tried to modify them a little bit to
23:14
solve a problem and what we were what
23:16
we've been trying to do is just start
23:18
completely from from scratch and so
23:20
people said that was a crazy thing to do
23:22
and no one thought it was very um it did
23:25
was very much on The Lunatic Fringe
23:27
until um when we start getting better at
23:29
it and really this is in the last
23:31
several years suddenly it's in the
23:33
mainstream and you know I companies
23:35
start all the time and say we're part of
23:37
the protein design Revolution and you
23:39
know I so it's kind of interesting with
23:42
this field going from being something
23:43
which was really kind of crazy and and
23:46
didn't seem like it would ever be useful
23:47
to anything for anything to being
23:50
something that's so mainstream that big
23:51
companies you know are just starting all
23:53
the time and it's kind of on the tip of
23:55
everyone's
23:56
tongue can you sh what maybe next in
24:00
your work or what would you like to
24:01
accomplish next yes um well um you know
24:04
as was already alluded to I think we're
24:05
really just at the beginning we figured
24:07
out how to design new proteins we
24:09
figured out how to make them um you know
24:12
bind to cancer targets for example and
24:15
we're starting and we're getting better
24:16
at learning how to um make them catalyze
24:19
chemical reactions so we're we've really
24:21
learned a lot about how to design
24:23
proteins with new functions so I think
24:26
now what's tremendously exciting is is
24:28
to look at the vast array of problems
24:30
that humans face and try and design
24:32
proteins that solve these problems and
24:34
I'm really fortunate I hope that that
24:36
that many of you can come over uh to the
24:39
lab in just a moment you'll see there
24:41
are large numbers of super brilliant
24:44
super super smart super energetic
24:46
students in post talks who are now
24:47
coming from all over the world to the
24:49
University of Washington to learn how to
24:51
design proteins and each one of them has
24:53
a problem they want to solve uh for
24:55
example Susanna who came from Mexico is
24:58
a designing proteins that block the
25:00
major components of snake venom as a as
25:02
a better
25:03
antivenom and uh you'll also meet
25:05
students who working on improving um the
25:08
efficiency of photosynthesis so really
25:09
across the board there's so many
25:11
exciting things to do now so I really do
25:13
think we're just at the beginning of the
25:15
impact that that that we can have and is
25:18
there a single problem that you see kind
25:20
of Rises to the top you mentioned
25:23
students is there one that we could just
25:25
solve this problem what would that be um
25:27
you know I I kind of I kind of love them
25:29
all I mean they're all I mean I I I we
25:32
only work on things that I'm really
25:34
really excited about and I think the
25:36
neat thing about this area now is
25:37
there's just so much potential across
25:39
the
25:43
board yeah how old I'm 62 62 yeah okay
25:50
you are still younger
25:54
than but he's 26 apart
25:59
yeah do you have a dream function for
26:02
one of the proteins that you could
26:04
create that would be considered
26:06
lunatic yeah that's a good question one
26:08
of the things that um that exists in
26:11
biology are molecular Motors so um for
26:16
example the way that our our muscles
26:17
move they they're little machines that
26:19
are involved in the contraction and the
26:21
movement um and uh the way that um uh
26:25
things get organized in our bodies and
26:27
our cells through these very
26:29
sophisticated molecular machines so and
26:32
what they do is they take a chemical
26:34
Fuel and they use they they break down
26:38
that fuel just like kind of a car it
26:39
takes they take a fuel and they use it
26:41
to to do something very actively so the
26:45
the newest generation of projects in my
26:47
lab is to design molecular machines now
26:50
what could they be good for um well in
26:53
bi in biology there are machines inside
26:55
our cell that do quality control and and
26:57
are important for removing a lot of the
26:59
junk that happens during cellular
27:01
transactions there really aren't any
27:03
machines outside of ourselves in
27:05
circulation but we know that there's all
27:08
sorts of you know junk accumulates in
27:10
our bloodstream there's we get
27:12
Aggregates we get amals forming so if we
27:15
could make machines that could go around
27:17
in the blood and uh in circulation and
27:20
basically do cleanup and and um uh and
27:24
and help U remove um toxic tissue that
27:27
could be a whole new way of treating
27:29
disease so that's one of the sort of
27:31
more lunati Fringe that we're working on
27:33
things we're working on now another I'll
27:35
give you one more example one and that
27:37
is I think I already alluded to this but
27:39
we have tooth and bone in our bodies and
27:41
there shells and those are proteins
27:43
interact with minerals what if we can
27:45
make completely new types of materials
27:47
by designing proteins that interact with
27:50
other minerals and cause and and you can
27:52
imagine all all kinds of hybrid
27:54
materials that could be superior in many
27:56
ways to any of the materials that we
27:58
have today including semiconductor
28:00
materials so it could be a new way of
28:01
patterning um things for electronics I'd
28:04
say that still qualifies as Lunatic
28:06
Fringe
28:07
also we
28:13
questions just want to make one last
28:15
comment and that's that David's
28:16
achievement isn't winning the Nobel
28:18
Prize the Nobel Prize is a recognition
28:22
of David's achievements thus far The
28:25
Best Is Yet To Come
28:29
thank you thank you
28:59
d
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